Provided Flashloader fails in timeout

Hi,

I am attempting to load the counters.bit (~1.3MB) in to the flash using Flashloader.cpp provided.
Although it does succeed in erasing, the write fails with the following message: " ** Timeout in WriteBitfile – Programming failed"
I am using usb connection in xem6010 in 32bit linux system. Could somebody give me any advice?

Thanks,